Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8453403-SRR8453404/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  183,648,430
 Normal Paired: 179,615,995 (97.80%)
 Chimeric Paired: 7,217 (0.00%)
 Chimeric Ambiguous: 5,554 (0.00%)
 Unmapped: 4,019,664 (2.19%)
 Ligation Motif Present: 43,993 (0.02%)
Alignable (Normal+Chimeric Paired): 179,623,212 (97.81%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-29T13:51:10,653]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 87,861,403 (47.84%)
PCR Duplicates: 91,761,809 (49.97%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 108,671,095
Intra-fragment Reads: 44,241,778 (24.09% / 50.35%)
Below MAPQ Threshold: 14,404,426 (7.84% / 16.39%)
Hi-C Contacts: 29,215,199 (15.91% / 33.25%)
 Ligation Motif Present: 16,385  (0.01% / 0.02%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 26% - 24% - 24% - 26%
Inter-chromosomal: 3,847,548  (2.10% / 4.38%)
Intra-chromosomal: 25,367,651  (13.81% / 28.87%)
Short Range (<20Kb): 16,811,521  (9.15% / 19.13%)
Long Range (>20Kb): 8,556,008  (4.66% / 9.74%)